affyio

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see affyio.

Tools for parsing Affymetrix data files


Bioconductor version: 3.18

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

Author: Ben Bolstad <bmb at bmbolstad.com>

Maintainer: Ben Bolstad <bmb at bmbolstad.com>

Citation (from within R, enter citation("affyio")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, Infrastructure, Microarray, Software
Version 1.72.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL (>= 2)
Depends R (>= 2.6.0)
Imports zlibbioc, methods
System Requirements
URL https://github.com/bmbolstad/affyio
See More
Suggests
Linking To
Enhances
Depends On Me makecdfenv, SCAN.UPC, sscore
Imports Me affy, affylmGUI, crlmm, ExiMiR, gcrma, oligo, oligoClasses, puma
Suggests Me BufferedMatrixMethods
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyio_1.72.0.tar.gz
Windows Binary affyio_1.72.0.zip (64-bit only)
macOS Binary (x86_64) affyio_1.72.0.tgz
macOS Binary (arm64) affyio_1.72.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affyio
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyio
Bioc Package Browser https://code.bioconductor.org/browse/affyio/
Package Short Url https://bioconductor.org/packages/affyio/
Package Downloads Report Download Stats