RefPlus

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see RefPlus.

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.


Bioconductor version: 3.18

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

Citation (from within R, enter citation("RefPlus")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RefPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.72.0
In Bioconductor since BioC 2.0 (R-2.5) (17 years)
License GPL (>= 2)
Depends R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
System Requirements
URL
See More
Suggests affydata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary RefPlus_1.72.0.zip
macOS Binary (x86_64) RefPlus_1.72.0.tgz
macOS Binary (arm64) RefPlus_1.72.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RefPlus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RefPlus
Bioc Package Browser https://code.bioconductor.org/browse/RefPlus/
Package Short Url https://bioconductor.org/packages/RefPlus/
Package Downloads Report Download Stats