DeMAND

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see DeMAND.

DeMAND


Bioconductor version: 3.18

DEMAND predicts Drug MoA by interrogating a cell context specific regulatory network with a small number (N >= 6) of compound-induced gene expression signatures, to elucidate specific proteins whose interactions in the network is dysregulated by the compound.

Author: Jung Hoon Woo <jw2853 at columbia.edu>, Yishai Shimoni <ys2559 at columbia.edu>

Maintainer: Jung Hoon Woo <jw2853 at columbia.edu>, Mariano Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("DeMAND")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DeMAND")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeMAND")
Using DeMAND PDF R Script
Reference Manual PDF
LICENSE Text

Details

biocViews GeneExpression, Network, NetworkEnrichment, Software, StatisticalMethod, SystemsBiology
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License file LICENSE
Depends R (>= 2.14.0), KernSmooth, methods
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeMAND_1.32.0.tar.gz
Windows Binary DeMAND_1.32.0.zip (64-bit only)
macOS Binary (x86_64) DeMAND_1.32.0.tgz
macOS Binary (arm64) DeMAND_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DeMAND
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DeMAND
Bioc Package Browser https://code.bioconductor.org/browse/DeMAND/
Package Short Url https://bioconductor.org/packages/DeMAND/
Package Downloads Report Download Stats