Clonality

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Clonality.

Clonality testing


Bioconductor version: 3.18

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

Citation (from within R, enter citation("Clonality")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Clonality")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Classification, CopyNumber, Diagnosis, Mutations, Software, aCGH, metastasis
Version 1.50.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-3
Depends R (>= 2.12.2), DNAcopy
Imports grDevices, graphics, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/Clonality
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Clonality
Package Short Url https://bioconductor.org/packages/Clonality/
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