An R interface to the Rfam database

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Documentation for package ‘rfaRm’ version 1.14.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

rfamConsensusSecondaryStructure	Retrieve the secondary structure of an Rfam family
rfamCovarianceModel	Get the covariance model associated to an Rfam family
rfamFamilyAccessionToID	Convert an Rfam family accession to an Rfam family ID
rfamFamilyIDToAccession	Convert an Rfam family ID to an Rfam family accession
rfamFamilySummary	Get a summary describing an Rfam family
rfamPDBMapping	Retrieve PDB entries with the 3D structure of members of an Rfam family
rfamSecondaryStructurePlot	Generate a diagram of the secondary structure of an Rfam family
rfamSecondaryStructureXMLSVG	Get an SVG file with a secondary structure representation of an Rfam family
rfamSeedAlignment	Retrieve the seed alignment of an Rfam family
rfamSeedTree	Get the phylogenetic tree of the seed multiple alignment of an Rfam family
rfamSeedTreeImage	Get an image of the phylogenetic tree of the seed multiple alignment of an Rfam family
rfamSequenceRegions	Retrieve all sequence regions belonging to an Rfam family
rfamSequenceSearch	Performs a sequence search of the Rfam database
rfamTextSearchFamilyAccession	Search the Rfam database by a given keyword