Bayesian Hidden Markov Model for the detection of differentially methylated regions

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Documentation for package ‘hummingbird’ version 1.12.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

hummingbird-package	A Bayesian Hidden Markov Model for the detection of differentially methylated regions
abnormM	Sample matrix
abnormUM	Sample matrix
exampleHummingbird	Sample dataset
exampleSECase	Sample input data
exampleSEControl	Sample input data
hummingbird	A Bayesian Hidden Markov Model for the detection of differentially methylated regions
hummingbirdEM	EM Algorithm for Fitting the Hidden Markov Model
hummingbirdEMinternal	EM Algorithm (internal)
hummingbirdGraph	Observations and Predictions Graphs
hummingbirdPostAdjustment	Post Adjustment algorithm for the output of the EM
hummingbirdPostAdjustmentInternal	Post Adjustment algorithm (internal)
normM	Sample matrix
normUM	Sample matrix
pos	Sample matrix