dPeak (Deconvolution of Peaks in ChIP-seq Analysis)

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Documentation for package ‘dpeak’ version 1.14.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

dpeak-package	dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
dpeak	dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
DpeakData-class	Class "DpeakData"
dpeakFit	Fit dPeak model
DpeakFit-class	Class "DpeakFit"
dpeakFit-method	Fit dPeak model
dpeakMotif	Implement de novo motif analysis based on the peak list
DpeakMotif-class	Class "DpeakMotif"
dpeakRead	Import peak list and aligned read files
exampleData	E. coli ChIP-seq Dataset
exportPeakList	Export deconvolution results to text files
exportPeakList-method	Export deconvolution results to text files
exportPlot	Export plots to pdf files.
exportPlot-method	Class "DpeakData"
exportPlot-method	Class "DpeakFit"
printEmpty	Return the peak regions without any reads.
printEmpty-method	Return the peak regions without any reads.
show-method	Class "DpeakData"
show-method	Class "DpeakFit"
show-method	Class "DpeakMotif"