Generate QC Reports For Alevin Output
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Documentation for package ‘alevinQC’ version 1.18.1
Help Pages
| alevinFryQCReport | Generate alevin/alevin-fry summary report |
| alevinFryQCShiny | Generate alevin/alevin-fry summary shiny app |
| alevinQC-pkg | alevinQC |
| alevinQCReport | Generate alevin/alevin-fry summary report |
| alevinQCShiny | Generate alevin/alevin-fry summary shiny app |
| checkAlevinFryInputFiles | Check that all required input files are available for alevin-fry |
| checkAlevinInputFiles | Check that all required input files are available |
| plotAlevinBarcodeCollapse | Summary plot of cell barcode collapsing |
| plotAlevinHistogram | Histogram of selected summary statistic |
| plotAlevinKneeNbrGenes | Knee plot of the number of detected genes per cell |
| plotAlevinKneeRaw | Knee plot of raw cell barcode frequencies |
| plotAlevinQuant | Panel of plots with quantification summary statistics |
| plotAlevinQuantPairs | Pairs plot with quantification summary statistics |
| qcReport | Generate alevin/alevin-fry summary report |
| qcShiny | Generate alevin/alevin-fry summary shiny app |
| readAlevinFryQC | Read alevin-fry data required to generate summary report |
| readAlevinQC | Read alevin data required to generate summary report |
| simpleafQCReport | Generate alevin/alevin-fry summary report |
| simpleafQCShiny | Generate alevin/alevin-fry summary shiny app |