Shiny app for canonical and back splicing analysis (i.e.
circular and mRNA analysis)
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Documentation for package ‘Ularcirc’ version 1.20.0
Help Pages
| BSJ_details | BSJ_details This function returns details of a BSJ string and returns a list of coordinates. Can accept two different formats, Ularcirc or generic. |
| bsj_fastq_generate | bsj_fastq_generate |
| bsj_to_circRNA_sequence | bsj_to_circRNA_sequence |
| chimericFilters | chimericFilters |
| chimericStats | chimericStats |
| Compatible_Annotation_DBs | Compatible_Annotation_DBs |
| FilterChimericJuncs | FilterChimericJuncs |
| FilterChimeric_Ularcirc | Wrapper function for Ularcirc shiny app which expects a list of objects to be returned |
| Junction_Sequence_from_Genome | Grab_BS_Junc_Sequence |
| loadSTAR_chimeric | loadSTAR_chimeric |
| plot_AllJunctions | plot_AllJunctions |
| RAD_score | RAD_score |
| SelectUniqueJunctions | SelectUniqueJunctions |
| sequence_from_exon_coords | sequence_from_exon_coords |
| Ularcirc | Ularcirc |