Thermal Shift Analysis in R

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Documentation for package ‘TSAR’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

analyze_norm	Analyze to Normalize
condition_IDs	TSAR Condition IDs
example_tsar_data	Example tsar_data file
gam_analysis	Analysis of all 96 wells through gam modeling
get_legend	Extract ggplot2 legend
graph_tsar	Graph tsar_data
join_well_info	Well information input function
merge_norm	Merge and format norm_data into tsar_data
merge_TSA	Merge TSA Raw Data and Analysis Files
model_boltzmann	Boltzmann Modeling on TSA data
model_fit	Refit and calculate derivative function
model_gam	Generalized Addidtive Modeling on TSA data
normalize	Normalize Fluorescence
normalize_fluorescence	Normalize Fluorescence Curve
qPCR_data1	qPCR_data1 Dataset
qPCR_data2	qPCR_data2 Dataset
read_analysis	Read TSA Analysis Data
read_raw_data	Read TSA Raw Data
read_tsar	Read analysis result
remove_raw	Remove selected raw curves
rescale	Rescale values between minimum and maximum.
run_boltzmann	Run Boltzmann Modeling
screen	Screen raw curves
Tm_difference	Calculate Tm difference for all conditions
Tm_est	Find inflection point function
TSA_average	Average TSA Curves
TSA_boxplot	TSA Box Plot
TSA_compare_plot	Compare TSA curves to control
TSA_ligands	TSA Ligands
TSA_proteins	TSA Proteins
TSA_Tms	Reformat TSA data into TSA Tms
TSA_wells_plot	TSA Well Curves Plot
view_deriv	View Derivative Curves
view_model	View Model
weed_raw	Weed raw data for corrupt curves
well_IDs	TSAR Well IDs
well_information	example well information Data
well_information_template	Well Information Template
write_tsar	write output files