Identify oncogenes and tumor suppressor genes from omics data
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Documentation for package ‘MoonlightR’ version 1.28.0
Help Pages
| dataFilt | Gene Expression (Rnaseqv2) data from TCGA LUAD |
| dataGRN | GRN gene regulatory network output |
| dataURA | Output example from function Upstram Regulator Analysis |
| DEGsmatrix | DEG Differentially expressed genes |
| DiseaseList | Information on 101 biological processes |
| DPA | DPA |
| EAGenes | Information about genes |
| FEA | FEA |
| GDCprojects | Information on GDC projects |
| geneInfo | Information about genes for normalization |
| GEO_TCGAtab | Information on GEO data (and overlap with TCGA)#' A data set containing the following data: |
| getDataGEO | getDataGEO |
| getDataTCGA | getDataTCGA |
| GRN | Generate network |
| GSEA | GSEA |
| knownDriverGenes | Information on known cancer driver gene from COSMIC |
| listMoonlight | Output list from Moonlight |
| LPA | LPA |
| moonlight | moonlight pipeline |
| MoonlightR | MoonlightR |
| plotCircos | plotCircos |
| plotFEA | plotFEA |
| plotNetworkHive | plotNetworkHive: Hive network plot |
| plotURA | plotURA: Upstream regulatory analysis heatmap plot |
| PRA | Pattern Recognition Analysis (PRA) |
| tabGrowBlock | Information growing/blocking characteristics for 101 selected biological processes |
| URA | URA Upstream Regulator Analysis |