GCSscore: an R package for microarray analysis for
Affymetrix/Thermo Fisher arrays
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Documentation for package ‘GCSscore’ version 1.16.0
Help Pages
| calcSF | calculates Scaling Factor (SF) values |
| computeSscore | Computes GCS-score values |
| GCSscore | Main GCS-score Function |
| get3primeIVTprobefileData | Read a data file describing the probe sequences on an Affymetrix genechip |
| getClariomSprobefileData | Read a data file describing the probe sequences on an Affymetrix genechip |
| getXTAprobefileData | Read a data file describing the probe sequences on an Affymetrix genechip |
| mismatch | Calculates mismatch values for probes |
| normalize | Normalization of GCS-score values |
| rawScore | Calculates the rawScore values |
| zoneRQ | Calculates the zone-based RawQ values |