CiteFuse: multi-modal analysis of CITE-seq data
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Documentation for package ‘CiteFuse’ version 1.14.0
Help Pages
| CiteFuse | CiteFuse |
| CITEseq_example | A subset of ECCITE-seq data (control) |
| crossSampleDoublets | crossSampleDoublets |
| DEbubblePlot | DEbubblePlot |
| DEcomparisonPlot | DEcomparisonPlot |
| DEgenes | DEgenes |
| DEgenesCross | DEgenesCross |
| geneADTnetwork | geneADTnetwork |
| igraphClustering | igraphClustering |
| importanceADT | importanceADT |
| ligandReceptorTest | ligandReceptorTest |
| lr_pair_subset | A subset of Ligand Receptor Pairs |
| normaliseExprs | normaliseExprs |
| plotHTO | plotHTO |
| plotHTOSingle | plotHTOSingle |
| preprocessing | A function to preprocess the list of expression matrix |
| readFrom10X | readFrom10X |
| reducedDimSNF | reducedDimSNF |
| sce_control_subset | A SingleCellExperiment of ECCITE-seq data |
| sce_ctcl_subset | A SingleCellExperiment of ECCITE-seq data |
| selectDEgenes | selectDEgenes |
| spectralClustering | spectralClustering |
| visImportance | visImportance |
| visLigandReceptor | visLigandReceptor |
| visualiseDim | visualiseDim |
| visualiseExprs | visualiseExprs |
| visualiseExprsList | visualiseExprsList |
| visualiseKNN | visualiseKNN |
| withinSampleDoublets | withinSampleDoublets |