Comparison between multiple levels of gene expression

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Documentation for package ‘tRanslatome’ version 1.40.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

tRanslatome-package	tRanslatome
average.similarity.scores	labelLevelsGOSetsHelpfile
average.similarity.scores-method	Class 'GOsims'
CCComparison	Sample data set for tRanslatome
CCEnrichment	Sample data set for tRanslatome
computeDEGs	computeDEGsHelpfile
computeDEGs-method	Class 'TranslatomeDataset'
CVplot	CVplotDEGsHelpfile
CVplot-method	Class 'DEGs'
DEGs-class	Class 'DEGs'
DEGs.table	DEGsTableDEGsHelpfile
DEGs.table-method	Class 'DEGs'
enriched.table	enrichedtableenrichedSetsHelpfile
enriched.table-method	Class 'EnrichedSets'
EnrichedSets-class	Class 'EnrichedSets'
expressionMatrix	Sample data set for tRanslatome
FC.threshold	FCThresholdDEGsHelpfile
FC.threshold-method	Class 'DEGs'
getConditionA	getConditionATranslatomeDatasetHelpfile
getConditionA-method	Class 'TranslatomeDataset'
getConditionB	getConditionBTranslatomeDatasetHelpfile
getConditionB-method	Class 'TranslatomeDataset'
getConditionC	getConditionCTranslatomeDatasetHelpfile
getConditionC-method	Class 'TranslatomeDataset'
getConditionD	getConditionDTranslatomeDatasetHelpfile
getConditionD-method	Class 'TranslatomeDataset'
getConditionLabels	getConditionLabelsTranslatomeDatasetHelpfile
getConditionLabels-method	Class 'TranslatomeDataset'
getDataType	getDataTypeTranslatomeDatasetHelpfile
getDataType-method	Class 'TranslatomeDataset'
getDEGs	getDEGsTranslatomeDatasetHelpfile
getDEGs-method	Class 'TranslatomeDataset'
getDEGsMethod	getDEGsMethodDEGsHelpfile
getDEGsMethod-method	Class 'DEGs'
getExprMatrix	getExprMatrixTranslatomeDatasetHelpfile
getExprMatrix-method	Class 'TranslatomeDataset'
getLevelLabels	getLevelLabelsTranslatomeDatasetHelpfile
getLevelLabels-method	Class 'TranslatomeDataset'
GOComparison	GOComparisonHelpfile
GOComparison-method	Class 'GOsets'
GOEnrichment	GOEnrichmentHelpfile
GOEnrichment-method	Class 'DEGs'
GOsets-class	Class 'GOsets'
GOsims-class	Class 'GOsims'
Heatmap	HeatmapEnrichedHelpfile
Heatmap-method	Class 'EnrichedSets'
Heatmap-method	Class 'GOsets'
Histogram	HistogramHelpfile
Histogram-method	Class 'DEGs'
identity.matrix	labelLevelsGOSetsHelpfile
identity.matrix-method	Class 'GOsims'
IdentityPlot	IdentityPlotHelpfile
IdentityPlot-method	Class 'GOsims'
label.condition	labelConditionDEGsHelpfile
label.condition-method	Class 'DEGs'
label.level.DEGs	labelLevelDEGsHelpfile
label.level.DEGs-method	Class 'DEGs'
label.level.enriched	labelLevelsEnrichedSetsHelpfile
label.level.enriched-method	Class 'EnrichedSets'
limma.DEGs	Sample data set for tRanslatome
MAplot	MAplotHelpfile
MAplot-method	Class 'DEGs'
newTranslatomeDataset	newTranslatomeDatasetHelpfile
Radar	RadarEnrichedHelpfile
Radar-method	Class 'EnrichedSets'
Radar-method	Class 'GOsets'
regulatory.elements.counts	Sample data set for tRanslatome
regulatory.elements.regulated	Sample data set for tRanslatome
RegulatoryEnrichment	RegulatoryEnrichmentHelpfile
RegulatoryEnrichment-method	Class 'DEGs'
Scatterplot	ScatterplotHelpfile
Scatterplot-method	Class 'DEGs'
SDplot	SDplotHelpfile
SDplot-method	Class 'DEGs'
show-method	Class 'DEGs'
show-method	Class 'EnrichedSets'
show-method	Class 'GOsets'
show-method	Class 'TranslatomeDataset'
significance.threshold	significanceThresholdDEGsHelpfile
significance.threshold-method	Class 'DEGs'
similarity.matrix	similaritymatrixGOSetsHelpfile
similarity.matrix-method	Class 'GOsims'
SimilarityPlot	SimilarityPlotHelpfile
SimilarityPlot-method	Class 'GOsims'
tRanslatome	tRanslatome
translatome.analysis	Sample data set for tRanslatome
tRanslatomeData	Sample data set for tRanslatome
TranslatomeDataset-class	Class 'TranslatomeDataset'
tRanslatomeSampleData	Sample data set for tRanslatome