Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

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Documentation for package ‘projectR’ version 1.18.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

alluvialMat	alluvialMat
AP.RNAseq6l3c3t	CoGAPS patterns and genes weights for p.RNAseq6l3c3t
aucMat	aucMat
bonferroniCorrectedDifferences	bonferroniCorrectedDifferences
cluster2pattern	Generic cluster2pattern function
cluster2pattern-class	cluster2pattern
cluster2pattern-method	Generic cluster2pattern function
clusterPlotR	Generic clusterPlotR function
clusterPlotR-method	Generic clusterPlotR function
correlateR	correlateR
correlateR-class	correlateR
CR.RNAseq6l3c3t	CogapsResult object for p.RNAseq6l3c3t
geneMatchR	Generic geneMatchR function
getTSNE	getTSNE
getUMAP	getUMAP
glial_counts	log-normalized count data from astrocytes and oligodendrocytes in the p6 mouse cortex.
initialize-method	Constructor for cluster2pattern
initialize-method	Constructor for correlateR
initialize-method	Constructor for rotatoR
intersectoR	Generic intersectoR function
intersectoR-method	Generic intersectoR function
map.ESepiGen4c1l	RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
map.RNAseq6l3c3t	RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
microglial_counts	log-normalized count data from microglial cells in the p6 mouse cortex.
p.ESepiGen4c1l	RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
p.RNAseq6l3c3t	RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pd.ESepiGen4c1l	RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
pd.RNAseq6l3c3t	RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
plotConfidenceIntervals	plotConfidenceIntervals
projectionDriveR	projectionDriveR
projectR	Generic projectR function
projectR-method	Generic projectR function
retinal_patterns	CoGAPS patterns learned from the developing mouse retina.
rotatoR	rotatoR
rotatoR-class	rotatoR