Save Bioconductor Objects To File

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Documentation for package ‘alabaster.base’ version 1.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

.addMissingStringPlaceholderAttribute	Utilities for saving vectors to HDF5
.altLoadObject	Alter the loading function
.altStageObject	Alter the staging generic
.chooseMissingStringPlaceholder	Utilities for saving vectors to HDF5
.createRedirection	Create a redirection file
.loadObject	Alter the loading function
.loadObjectInternal	Load an object from its metadata
.processMcols	Process R-level metadata
.processMetadata	Process R-level metadata
.quickReadCsv	Quickly read and write a CSV file
.quickWriteCsv	Quickly read and write a CSV file
.restoreMetadata	Restore R-level metadata
.saveBaseListFormat	Choose the format for certain objects
.saveDataFrameFormat	Choose the format for certain objects
.searchForMethods	Stage assorted objects
.stageObject	Alter the staging generic
.writeMetadata	Saving the metadata
acquireFile	Acquire file or metadata
acquireFile-method	Acquire file or metadata
acquireMetadata	Acquire file or metadata
acquireMetadata-method	Acquire file or metadata
addMissingPlaceholderAttributeForHdf5	Utilities for saving vectors to HDF5
altLoadObject	Alter the loading function
altLoadObjectFunction	Alter the loading function
altStageObject	Alter the staging generic
altStageObjectFunction	Alter the staging generic
checkValidDirectory	Check if a staging directory is valid
chooseMissingPlaceholderForHdf5	Utilities for saving vectors to HDF5
createRedirection	Create a redirection file
customloadObjectHelper	Load an object from its metadata
listDirectory	List staged objects in a directory
listLocalObjects	List staged objects in a directory
loadAtomicVector	Load an atomic vector
loadBaseFactor	Load a factor
loadBaseList	Load a base list
loadDataFrame	Load a DataFrame
loadDataFrameFactor	Load an DataFrame factor
loadDirectory	Load all non-child objects in a directory
loadObject	Load an object from its metadata
moveObject	Move a non-child object in the staging directory
processMcols	Process R-level metadata
processMetadata	Process R-level metadata
quickLoadObject	Convenience helpers for handling local directories
quickReadCsv	Quickly read and write a CSV file
quickStageObject	Convenience helpers for handling local directories
quickWriteCsv	Quickly read and write a CSV file
readLocalObject	Convenience helpers for handling local directories
removeObject	Remove a non-child object from the staging directory
restoreMetadata	Restore R-level metadata
saveBaseListFormat	Choose the format for certain objects
saveDataFrameFormat	Choose the format for certain objects
saveFormats	Choose the format for certain objects
saveLocalObject	Convenience helpers for handling local directories
schemaLocations	Load an object from its metadata
searchForMethods	Stage assorted objects
stageAtomicVector	Stage atomic vectors
stageObject	Stage assorted objects
stageObject-method	Stage atomic vectors
stageObject-method	Stage factors
stageObject-method	Stage a base list
stageObject-method	Stage a DataFrame
stageObject-method	Stage a DataFrameFactor object
stageObject-method	Stage assorted objects
transformVectorForHdf5	Utilities for saving vectors to HDF5
validateDirectory	Check if a staging directory is valid
writeMetadata	Saving the metadata