adverSCarial, generate and analyze the vulnerability of scRNA-seq classifiers to adversarial attacks

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Documentation for package ‘adverSCarial’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

advChar	adverSCarial class
advChar-class	adverSCarial class
advGridMinChange	Grid search of min change adversarial attack. Tries each combination on a cluster, given a list of genes and a list of modifications.
advList	adverSCarial class
advList-class	adverSCarial class
advMaxChange	Find a max change adversarial attack. It finds the longer list of genes you can modify on a cluster without changing its classification.
advModifications	Returns a modified RNA expression DelayedMatrix, or a modified SingleCellExperiment, for a given cluster, for a given modification.
advRandWalkMinChange	Random walk search of min change adversarial attack.
advSingleGene	Find a one gene min change adversarial attack list. A one gene min change adversarial attack refers to the modification of a single gene within a cluster, leading to a change in its classification. The function returns a list of genes/new classification.
matrixFromSCE	Returns the RNA expression matrix from a SingleCellExperiment with unique hgnc gene names in columns
maxChangeOverview	Gives an overview of the susceptibility to max change attacks, for each cell type, for a given list of modifications.
MClassifier	Example cell type classifier for pbmc clustered datasets.
predictWithNewValue	Returns a classification and an odd value from a RNA expression DelayedMatrix or a SingleCellExperiment object, for given genes, for a given cluster, for a given modification.
sceConvertToHGNC	Returns a SingleCellExperiment object keeping unique HGNC gene
singleGeneOverview	Gives an overview of the susceptibility to single gene attacks, for each cell type, for a given list of modifications.