Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata

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Documentation for package ‘SigCheck’ version 2.34.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

SigCheck-package	Check a gene signature's survival and/or classification performance against random signatures, known signatures, and permuted data/metadata.
classifyResults	Precomputed list of results for a calls to 'sigCheckRandom' and 'sigCheckKnown' using the 'breastCancerNKI' dataset.
knownSignatures	Previously identified gene signatures for use in 'sigCheckKnown'
nkiResults	Precomputed list of results for a call to 'sigCheckAll' using the 'breastCancerNKI' dataset.
resultsNKI	Previously identified gene signatures for use in 'sigCheckKnown'
SigCheck	Check a gene signature's survival and/or classification performance against random signatures, known signatures, and permuted data/metadata.
sigCheck	Create a 'SigCheckObject' and establish baseline performance.
sigCheckAll	Run a default set of checks on a gene signature.
sigCheckKnown	Check signature performance against a panel of known signatures.
SigCheckObject	Class '"SigCheckObject"'
SigCheckObject-class	Class '"SigCheckObject"'
sigCheckPermuted	Check signature performance against performance on randomly permuted data.
sigCheckPlot	Plot results of a signature check or set of checks
sigCheckRandom	Check signature performance against signatures composed of randomly selected features