Identification of genetic Variants affecting Alternative
Splicing
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Documentation for package ‘IVAS’ version 2.22.0
Help Pages
| IVAS-package | IVAS : Identification of genomic variants affecting Alternative Splicing |
| ASdb-class | ASdb s4 class - a container for results from functions of the 'IVAS' package. |
| calSignificant | Deprecated |
| CalSigSNP | Calculate significance SNPs |
| chrseparate | Separate a TxDb object based on a chromosome. |
| findAlternative | Find alternative exons of a gene. |
| findOversnp | Find SNPs which belong to alternative exons and flanking introns of them. |
| IVAS | IVAS : Identification of genomic variants affecting Alternative Splicing |
| IVAS-deprecated | Deprecated functions in package 'IVAS' |
| MsqtlFinder | Deprecated |
| RatioFromFPKM | Estimate relative expression ratio. |
| sampleexp | CEU expression data |
| samplesnp | CEU genotype data |
| samplesnplocus | snplocus |
| saveBplot | Save boxplots |
| Splicingfinder | Find alternatively spliced exons |
| sqtlfinder | Deprecated |
| sQTLsFinder | Find SQTLs. |