This vignette provides links to videos demonstrating some of the functionalities of CytoPipeline R package suite. It is distributed, as well as the accompanying videos, under a CC BY-SA license.
CytoPipeline 1.2.0
## R version 4.3.1 (2023-06-16)
## Platform: aarch64-apple-darwin20 (64-bit)
## Running under: macOS Ventura 13.6.1
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: America/New_York
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] patchwork_1.1.2 CytoPipelineGUI_1.0.0 CytoPipeline_1.2.0
## [4] BiocStyle_2.30.0
##
## loaded via a namespace (and not attached):
## [1] DBI_1.1.3 gridExtra_2.3 rlang_1.1.1
## [4] magrittr_2.0.3 clue_0.3-64 GetoptLong_1.0.5
## [7] matrixStats_1.0.0 compiler_4.3.1 RSQLite_2.3.1
## [10] png_0.1-8 vctrs_0.6.3 reshape2_1.4.4
## [13] stringr_1.5.0 pkgconfig_2.0.3 shape_1.4.6
## [16] crayon_1.5.2 fastmap_1.1.1 magick_2.7.4
## [19] dbplyr_2.3.3 ellipsis_0.3.2 labeling_0.4.2
## [22] utf8_1.2.3 promises_1.2.0.1 ncdfFlow_2.48.0
## [25] rmarkdown_2.23 graph_1.80.0 purrr_1.0.1
## [28] bit_4.0.5 xfun_0.39 zlibbioc_1.48.0
## [31] cachem_1.0.8 jsonlite_1.8.7 flowWorkspace_4.14.0
## [34] blob_1.2.4 highr_0.10 later_1.3.1
## [37] parallel_4.3.1 cluster_2.1.4 R6_2.5.1
## [40] bslib_0.5.0 stringi_1.7.12 RColorBrewer_1.1-3
## [43] jquerylib_0.1.4 Rcpp_1.0.11 bookdown_0.34
## [46] iterators_1.0.14 knitr_1.43 zoo_1.8-12
## [49] IRanges_2.36.0 flowCore_2.14.0 httpuv_1.6.11
## [52] tidyselect_1.2.0 yaml_2.3.7 doParallel_1.0.17
## [55] codetools_0.2-19 curl_5.0.1 lattice_0.21-8
## [58] tibble_3.2.1 plyr_1.8.8 Biobase_2.62.0
## [61] shiny_1.7.4.1 withr_2.5.0 evaluate_0.21
## [64] BiocFileCache_2.10.1 circlize_0.4.15 pillar_1.9.0
## [67] BiocManager_1.30.22 filelock_1.0.2 foreach_1.5.2
## [70] flowAI_1.32.0 stats4_4.3.1 generics_0.1.3
## [73] diagram_1.6.5 S4Vectors_0.40.1 ggplot2_3.4.2
## [76] munsell_0.5.0 ggcyto_1.30.0 scales_1.2.1
## [79] xtable_1.8-4 PeacoQC_1.12.0 glue_1.6.2
## [82] changepoint_2.2.4 tools_4.3.1 hexbin_1.28.3
## [85] data.table_1.14.8 XML_3.99-0.14 grid_4.3.1
## [88] RProtoBufLib_2.14.0 colorspace_2.1-0 cli_3.6.1
## [91] fansi_1.0.4 cytolib_2.14.0 ComplexHeatmap_2.18.0
## [94] dplyr_1.1.2 Rgraphviz_2.46.0 gtable_0.3.3
## [97] sass_0.4.6 digest_0.6.33 BiocGenerics_0.48.0
## [100] farver_2.1.1 rjson_0.2.21 memoise_2.0.1
## [103] htmltools_0.5.5 lifecycle_1.0.3 httr_1.4.6
## [106] GlobalOptions_0.1.2 mime_0.12 bit64_4.0.5