Reliable CNV detection in targeted sequencing applications
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Documentation for package ‘CNVPanelizer’ version 1.34.0
Help Pages
| CNVPanelizer-package | Reliable CNV detection in targeted sequencing applications |
| Background | Background |
| BedToGenomicRanges | BedToGenomicRanges |
| BootList | BootList |
| CNVPanelizer | Reliable CNV detection in targeted sequencing applications |
| CNVPanelizerFromReadCounts | CNVPanelizerFromReadCounts |
| CNVPanelizerFromReadCountsHELPER | CNVPanelizerFromReadCountsHELPER |
| CollectColumnFromAllReportTables | CollectColumnFromAllReportTables |
| CombinedNormalizedCounts | CombinedNormalizedCounts |
| IndexMultipleBams | IndexMultipleBams |
| NormalizeCounts | NormalizeCounts |
| PlotBootstrapDistributions | PlotBootstrapDistributions |
| ReadCountsFromBam | ReadCountsFromBam |
| ReadXLSXToList | ReadXLSXToList |
| referenceReadCounts | Reference sample data |
| ReportTables | ReportTables |
| RunCNVPanelizerShiny | RunCNVPanelizerShiny |
| sampleReadCounts | Test sample data |
| SelectReferenceSetByInterquartileRange | SelectReferenceSetByInterquartileRange |
| SelectReferenceSetByKmeans | SelectReferenceSetByKmeans |
| SelectReferenceSetByPercentil | SelectReferenceSetByPercentil |
| SelectReferenceSetFromReadCounts | SelectReferenceSetFromReadCounts |
| StatusHeatmap | StatusHeatmap |
| WriteListToXLSX | WriteListToXLSX |