GSAR

DOI: 10.18129/B9.bioc.GSAR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see GSAR.

Gene Set Analysis in R

Bioconductor version: 3.17

Gene set analysis using specific alternative hypotheses. Tests for differential expression, scale and net correlation structure.

Author: Yasir Rahmatallah <yrahmatallah at uams.edu>, Galina Glazko <gvglazko at uams.edu>

Maintainer: Yasir Rahmatallah <yrahmatallah at uams.edu>, Galina Glazko <gvglazko at uams.edu>

Citation (from within R, enter citation("GSAR")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSAR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSAR")

 

PDF R Script Gene Set Analysis in R -- the GSAR Package
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Software, StatisticalMethod
Version 1.34.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL (>=2)
Depends R (>= 3.0.1), igraph (>= 0.7.1)
Imports stats, graphics
LinkingTo
Suggests MASS, GSVAdata, ALL, tweeDEseqCountData, GSEABase, annotate, org.Hs.eg.db, Biobase, genefilter, hgu95av2.db, edgeR, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSAR_1.34.0.tar.gz
Windows Binary GSAR_1.34.0.zip
macOS Binary (x86_64) GSAR_1.34.0.tgz
macOS Binary (arm64) GSAR_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GSAR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSAR
Bioc Package Browser https://code.bioconductor.org/browse/GSAR/
Package Short Url https://bioconductor.org/packages/GSAR/
Package Downloads Report Download Stats

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