Cell Signalling Using Single Cell RNAseq Data Analysis
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Documentation for package ‘SingleCellSignalR’ version 1.12.0
Help Pages
| cell_classifier | Cell classifier |
| cell_signaling | Cell Signaling |
| clustering | Clustering |
| cluster_analysis | Cluster Analysis |
| data_prepare | Data Prepare |
| example_dataset | Example dataset |
| expression_plot | Expression Plot |
| expression_plot_2 | Expression Plot 2 |
| inter_network | inter network |
| intra_network | intra network |
| LRdb | Ligand/Receptor interactions data table |
| LRscore | Calculation of the LRscore |
| markers | Markers |
| markers_default | A list of cell types markers |
| mm2Hs | Mus Musculus (mm) to Homo Sapiense (Hs) Orthology table |
| mv_interactions | most variable interactions |
| PwC_ReactomeKEGG | Pathway Commons Reactome KEGG 2019-05-08 |
| simplify_interactions | simplify_interactions |
| visualize_interactions | Visualize interactions |