Annotate microarrays and perform cross-species gene expression analyses using flat file databases

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Documentation for package ‘annotationTools’ version 1.74.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

annot_HGU133A	annot\_HGU133A
compactList	Concatenate list elements
gene_orthologs_part	Example gene_orthologs file
getANNOTATION	General annotation function
getGENEID	Find gene IDs
getGENEONTOLOGY	Find Gene Ontology (GO) annotation
getGENESYMBOL	Find gene symbols
getGENETITLE	Find gene titles
getHOMOLOG	Find homologous/orthologous gene (ID)
getMULTIANNOTATION	General (multiple) annotation function
getOrthologousProbesets	Find orthologous/homologous probe sets present in a target set using a mapping table
getPROBESET	Find probe set IDs
HG-U133_Plus_2_annot_part	Example Affymetrix annotation file
HG-U133_Plus_2_ortholog_part	Example Affymetrix ortholog file
homologene_part	Example HomoloGene file
listToCharacterVector	Turn list into character vector
Mouse430_2_annot_part	Example Affymetrix annotation file
ortho	ortho
ps2ps	Find orthologous/homologous probe sets across two different Affymetrix microarray formats using a table of orthologs
table_human	table\_human
table_mouse	table\_mouse