Annotate microarrays and perform cross-species gene expression analyses using flat file databases


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Documentation for package ‘annotationTools’ version 1.74.0

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annot_HGU133A annot\_HGU133A
compactList Concatenate list elements
gene_orthologs_part Example gene_orthologs file
getANNOTATION General annotation function
getGENEID Find gene IDs
getGENEONTOLOGY Find Gene Ontology (GO) annotation
getGENESYMBOL Find gene symbols
getGENETITLE Find gene titles
getHOMOLOG Find homologous/orthologous gene (ID)
getMULTIANNOTATION General (multiple) annotation function
getOrthologousProbesets Find orthologous/homologous probe sets present in a target set using a mapping table
getPROBESET Find probe set IDs
HG-U133_Plus_2_annot_part Example Affymetrix annotation file
HG-U133_Plus_2_ortholog_part Example Affymetrix ortholog file
homologene_part Example HomoloGene file
listToCharacterVector Turn list into character vector
Mouse430_2_annot_part Example Affymetrix annotation file
ortho ortho
ps2ps Find orthologous/homologous probe sets across two different Affymetrix microarray formats using a table of orthologs
table_human table\_human
table_mouse table\_mouse