DOI: 10.18129/B9.bioc.emtdata  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see emtdata.

An ExperimentHub Package for data sets with an Epithelial to Mesenchymal Transition (EMT)

Bioconductor version: 3.16

This package provides pre-processed RNA-seq data where the epithelial to mesenchymal transition was induced on cell lines. These data come from three publications Cursons et al. (2015), Cursons etl al. (2018) and Foroutan et al. (2017). In each of these publications, EMT was induces across multiple cell lines following treatment by TGFb among other stimulants. This data will be useful in determining the regulatory programs modified in order to achieve an EMT. Data were processed by the Davis laboratory in the Bioinformatics division at WEHI.

Author: Malvika D. Kharbanda [aut, cre] , Chin Wee Tan [aut] , Dharmesh D. Bhuva [aut]

Maintainer: Malvika D. Kharbanda <kharbanda.m at wehi.edu.au>

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biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData
Version 1.6.0
License GPL-3
Depends R (>= 4.1)
Imports edgeR, ExperimentHub, SummarizedExperiment
Suggests testthat (>= 3.0.0), stringr, plyr, prettydoc, BiocStyle, Homo.sapiens, RColorBrewer, rmarkdown, BiocFileCache, knitr
URL https://github.com/DavisLaboratory/emtdata
BugReports https://github.com/DavisLaboratory/emtdata/issues
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