DOI: 10.18129/B9.bioc.bodymapRat  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see bodymapRat.

Experimental dataset from the rat BodyMap project

Bioconductor version: 3.16

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at>

Citation (from within R, enter citation("bodymapRat")):


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HTML R Script The bodymapRat data user's guide
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biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.14.0
License CC BY 4.0
Depends R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports utils
Suggests rmarkdown, knitr, BiocStyle, testthat
Depends On Me
Imports Me
Suggests Me qsmooth
Links To Me
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