DOI: 10.18129/B9.bioc.TMExplorer  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TMExplorer.

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Bioconductor version: 3.16

This package provides a tool to search and download a collection of tumour microenvironment single-cell RNA sequencing datasets and their metadata. TMExplorer aims to act as a single point of entry for users looking to study the tumour microenvironment at the single cell level. Users can quickly search available datasets using the metadata table and then download the ones they are interested in for analysis.

Author: Erik Christensen [aut, cre], Alaine Naidas [aut], David Chen [aut], Parisa Shooshtari [aut]

Maintainer: Erik Christensen <echris3 at>

Citation (from within R, enter citation("TMExplorer")):


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biocViews CancerData, ExperimentData, ExpressionData, GEO, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version 1.8.0
License Artistic-2.0
Depends R (>= 4.1), SingleCellExperiment, BiocFileCache
Imports methods, Matrix
Suggests BiocStyle, knitr, rmarkdown
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