DOI: 10.18129/B9.bioc.NxtIRFdata  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see NxtIRFdata.

Data for NxtIRF

Bioconductor version: 3.16

NxtIRFdata is a companion package for SpliceWiz, an interactive analysis and visualization tool for alternative splicing quantitation (including intron retention) for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to demonstrate SpliceWiz's functionality. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.

Author: Alex Chit Hei Wong [aut, cre, cph], Ulf Schmitz [ctb]

Maintainer: Alex Chit Hei Wong <a.wong at centenary.org.au>

Citation (from within R, enter citation("NxtIRFdata")):


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HTML R Script NxtIRFdata: a data package for NxtIRF
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biocViews ExperimentData, ExperimentHub, ExpressionData, Genome, PackageTypeData, RNASeqData
Version 1.4.0
License MIT + file LICENSE
Imports ExperimentHub, BiocFileCache, rtracklayer, R.utils
Suggests testthat (>= 3.0.0), knitr, rmarkdown
URL https://github.com/alexchwong/NxtIRFdata
BugReports https://support.bioconductor.org/
Depends On Me NxtIRFcore, SpliceWiz
Imports Me
Suggests Me
Links To Me
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Source Package NxtIRFdata_1.4.0.tar.gz
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Package Short Url https://bioconductor.org/packages/NxtIRFdata/
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