DOI: 10.18129/B9.bioc.DuoClustering2018  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see DuoClustering2018.

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Bioconductor version: 3.16

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

Author: Angelo Duò, Charlotte Soneson

Maintainer: Angelo Duò <angelo.duo at icloud.com>

Citation (from within R, enter citation("DuoClustering2018")):


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HTML R Script Apply clustering method
HTML R Script Plot performance summaries
HTML R Script Visualize data sets and clustering results with iSEE
PDF   Reference Manual
Text   NEWS


biocViews ExperimentData, SingleCellData
Version 1.16.0
License GPL (>=2)
Imports ExperimentHub, utils, magrittr, dplyr, tidyr, mclust, ggplot2, purrr, reshape2, viridis, ggthemes, stats, methods
Suggests knitr, rmarkdown, BiocStyle, iSEE, scater, SingleCellExperiment, SummarizedExperiment, plyr
Depends On Me
Imports Me
Suggests Me corral, scry
Links To Me
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Source Package DuoClustering2018_1.16.0.tar.gz
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