DOI: 10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh38  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh38.

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: 3.16

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh38")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs
Version 0.99.12
License Artistic-2.0
Depends R (>= 2.10), BSgenome
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh38
Depends On Me
Imports Me
Suggests Me BSgenome
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XtraSNPlocs.Hsapiens.dbSNP144.GRCh38_0.99.12.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh38/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: