DOI: 10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh37  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: 3.16

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")):


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biocViews AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs
Version 0.99.12
License Artistic-2.0
Depends R (>= 2.10), BSgenome
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37
Depends On Me
Imports Me appreci8R
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Source Package XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz
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