DOI: 10.18129/B9.bioc.AHWikipathwaysDbs  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see AHWikipathwaysDbs.

Metabolites linked to WikiPathways pathways (for AnnotationHub)

Bioconductor version: 3.16

The package provides a comprehensive mapping table of metabolites linked to Wikipathways pathways. The tables include HMDB, KEGG, ChEBI, Drugbank, PubChem compound, ChemSpider, KNApSAcK, and Wikidata IDs plus CAS and InChIKey. The tables are provided for each of the 25 species ("Anopheles gambiae", "Arabidopsis thaliana", "Bacillus subtilis", "Bos taurus", "Caenorhabditis elegans", "Canis familiaris", "Danio rerio", "Drosophila melanogaster", "Equus caballus", "Escherichia coli", "Gallus gallus", "Gibberella zeae", "Homo sapiens", "Hordeum vulgare", "Mus musculus", "Mycobacterium tuberculosis", "Oryza sativa", "Pan troglodytes", "Plasmodium falciparum", "Populus trichocarpa", "Rattus norvegicus", "Saccharomyces cerevisiae", "Solanum lycopersicum", "Sus scrofa", "Zea mays"). These table information can be used for Metabolite Set Enrichment Analysis.

Author: Kozo Nishida [aut, cre]

Maintainer: Kozo Nishida <kozo.nishida at gmail.com>

Citation (from within R, enter citation("AHWikipathwaysDbs")):


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HTML R Script Provide WikipathwaysDb databases for AnnotationHub
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biocViews AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation
Version 0.99.4
License Artistic-2.0
Depends R (>= 4.1.0)
Imports AnnotationHub(>= 2.23.0)
Suggests BiocStyle, magrittr, dplyr, tibble, knitr, rmarkdown
URL https://github.com/kozo2/AHWikipathwaysDbs
Depends On Me
Imports Me
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Source Package AHWikipathwaysDbs_0.99.4.tar.gz
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