DOI: 10.18129/B9.bioc.AHPathbankDbs  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see AHPathbankDbs.

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Bioconductor version: 3.16

The package provides a comprehensive mapping table of metabolites and proteins linked to PathBank pathways. The tables include HMDB, KEGG, ChEBI, CAS, Drugbank, Uniprot IDs. The tables are provided for each of the 10 species ("Homo sapiens", "Escherichia coli", "Mus musculus", "Arabidopsis thaliana", "Saccharomyces cerevisiae", "Bos taurus", "Caenorhabditis elegans", "Rattus norvegicus", "Drosophila melanogaster", and "Pseudomonas aeruginosa"). These table information can be used for Metabolite Set (and other) Enrichment Analysis.

Author: Kozo Nishida [aut, cre]

Maintainer: Kozo Nishida <kozo.nishida at gmail.com>

Citation (from within R, enter citation("AHPathbankDbs")):


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HTML R Script Provide PathbankDb databases for AnnotationHub
PDF   Reference Manual
Text   NEWS


biocViews AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation
Version 0.99.5
License Artistic-2.0
Depends R (>= 4.1.0)
Imports AnnotationHub(>= 2.23.0)
Suggests BiocStyle, magrittr, dplyr, tibble, knitr, rmarkdown
URL https://github.com/kozo2/AHPathbankDbs
Depends On Me
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Source Package AHPathbankDbs_0.99.5.tar.gz
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Package Short Url https://bioconductor.org/packages/AHPathbankDbs/
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