## ----setup, include = FALSE------------------------------------------------------------------------------------------- options(width=120) knitr::opts_chunk$set( collapse = TRUE, eval=interactive(), echo=TRUE, comment = "#>" ) ## ----eval=FALSE------------------------------------------------------------------------------------------------------- # library(igvR) # igv <- igvR() # setBrowserWindowTitle(igv, "Stock Genomes") # print(sort(getSupportedGenomes(igv))) ## ----eval=FALSE------------------------------------------------------------------------------------------------------- # setGenome(igv, "hg38_1Kg") # showGenomicRegion(igv, "APOE") # zoomOut(igv) # ## ---- eval=TRUE, echo=FALSE, out.width="95%"-------------------------------------------------------------------------- knitr::include_graphics("stockGenomes.png") ## ----eval=TRUE-------------------------------------------------------------------------------------------------------- sessionInfo()