Changes in version 0.99.0 (2019-10-01) + Submitted to Bioconductor. Changes in version 0.99.1 (2019-10-01) + Added NEWS file. Changes in version 0.99.2 (2019-10-01) + Removed .Rproj file Changes in version 0.99.3 (2019-10-01) + Fixed package loading issue. Changes in version 0.99.4 (2019-10-01) + Fixed vignette issue. Changes in version 0.99.5 (2019-10-15) + Implemented S4 class instead of reference class. Changes in version 0.99.6 (2019-10-16) + Replaced "1:" with "seq_len". Changes in version 0.99.7 (2019-10-17) + Made changes to conform to Bioconductor guidelines Changes in version 0.99.8 (2019-10-17) + Made additional changes to conform to Bioconductor guidelines Changes in version 0.99.9 (2019-10-22) + Fixed issue from quantifying single-end reads Changes in version 0.99.10 (2019-10-25) + Fixed issue from quantifying RI and ALSS Changes in version 1.1.1 (2019-12-12) + Added permutation test to DRaWR Changes in version 1.1.2 (2020-03-04) + Modified to ensure that permutation is performed only on gene nodes. Changes in version 1.1.3 (2020-03-27) + Changed maintainer's email address Changes in version 1.1.4 (2020-04-01) + Changed formats of outputs from ASpediaFI