flagme

DOI: 10.18129/B9.bioc.flagme  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see flagme.

Analysis of Metabolomics GC/MS Data

Bioconductor version: 3.16

Fragment-level analysis of gas chromatography-massspectrometry metabolomics data.

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Citation (from within R, enter citation("flagme")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")

 

PDF R Script \texttt{flagme}: Fragment-level analysis of \\ GC-MS-based metabolomics data
PDF R Script Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, MassSpectrometry, Software
Version 1.54.0
In Bioconductor since BioC 2.4 (R-2.9) (14 years)
License LGPL (>= 2)
Depends gcspikelite, xcms, CAMERA
Imports gplots, graphics, MASS, methods, SparseM, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flagme_1.54.0.tar.gz
Windows Binary flagme_1.54.0.zip (64-bit only)
macOS Binary (x86_64) flagme_1.54.0.tgz
macOS Binary (arm64) flagme_1.54.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flagme
Bioc Package Browser https://code.bioconductor.org/browse/flagme/
Package Short Url https://bioconductor.org/packages/flagme/
Package Downloads Report Download Stats

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