DOI: 10.18129/B9.bioc.XCIR  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see XCIR.


Bioconductor version: 3.16

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

Author: Renan Sauteraud, Dajiang Liu

Maintainer: Renan Sauteraud <rxs575 at psu.edu>

Citation (from within R, enter citation("XCIR")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Coverage, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.12.0
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License GPL-2
Depends methods
Imports stats, utils, tools, data.table, Biostrings, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors
Suggests knitr, rmarkdown
URL https://github.com/SRenan/XCIR
BugReports https://github.com/SRenan/XCIR/issues
Depends On Me
Imports Me
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Source Repository git clone https://git.bioconductor.org/packages/XCIR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XCIR
Package Short Url https://bioconductor.org/packages/XCIR/
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