DOI: 10.18129/B9.bioc.SANTA  

This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.

Spatial Analysis of Network Associations

Bioconductor version: 3.16

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex Cornish [cre, aut]

Maintainer: Alex Cornish <alex.cornish at>

Citation (from within R, enter citation("SANTA")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Introduction to SANTA
PDF   Reference Manual
Text   NEWS


biocViews Clustering, Network, NetworkEnrichment, Software
Version 2.34.0
In Bioconductor since BioC 2.12 (R-3.0) (10 years)
License GPL (>= 2)
Depends R (>= 4.1), igraph
Imports graphics, Matrix, methods, stats
Suggests BiocGenerics, BioNet, DLBCL, formatR, knitr, msm, org.Sc.sgd.db, markdown, rmarkdown, RUnit
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package SANTA_2.34.0.tar.gz
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macOS Binary (arm64) SANTA_2.34.0.tgz
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