Tools for conducting enrichment analysis of MeSH

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Documentation for package ‘meshr’ version 2.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

meshr-package	Enrichment analysis for MeSH terms.
annotation-method	Class "MeSHHyperGParams"
annotation<--method	Class "MeSHHyperGParams"
category	A function to return the name of MeSH category
category-method	A function to return the name of MeSH category
category<-	A function to return the name of MeSH category
category<--method	A function to return the name of MeSH category
database	A function to return the name of MeSH database
database-method	A function to return the name of MeSH database
database<-	A function to return the name of MeSH database
database<--method	A function to return the name of MeSH database
geneIds-method	Class "MeSHHyperGParams"
geneIds<--method	Class "MeSHHyperGParams"
generic,category	A function to return the name of MeSH category
generic,database	A function to return the name of MeSH database
initialize-method	Class "MeSHHyperGParams"
makeValidParams-method	Class "MeSHHyperGParams"
meshAnnotation	Class "MeSHHyperGResult"
meshAnnotation-method	Class "MeSHHyperGResult"
meshCategory	Class "MeSHHyperGResult"
meshCategory-method	Class "MeSHHyperGResult"
meshDatabase	Class "MeSHHyperGResult"
meshDatabase-method	Class "MeSHHyperGResult"
MeSHHyperGParams-class	Class "MeSHHyperGParams"
MeSHHyperGResult-class	Class "MeSHHyperGResult"
meshHyperGTest	Hypergeometric Tests for MeSH term association
meshHyperGTest-method	Hypergeometric Tests for MeSH term association
meshIds	Class "MeSHHyperGResult"
meshIds-method	Class "MeSHHyperGResult"
meshr	Enrichment analysis for MeSH terms.
meshTerms	Class "MeSHHyperGResult"
meshTerms-method	Class "MeSHHyperGResult"
pAdjust	Class "MeSHHyperGParams"
pAdjust-method	Class "MeSHHyperGParams"
pAdjust<-	Class "MeSHHyperGParams"
pAdjust<--method	Class "MeSHHyperGParams"
pvalueCutoff-method	Class "MeSHHyperGParams"
pvalueCutoff<--method	Class "MeSHHyperGParams"
pvalues	Class "MeSHHyperGResult"
pvalues-method	Class "MeSHHyperGResult"
show	Class "MeSHHyperGResult"
show-method	Class "MeSHHyperGResult"
summary	Class "MeSHHyperGResult"
summary-method	Class "MeSHHyperGResult"
universeGeneIds	Class "MeSHHyperGParams"
universeGeneIds-method	Class "MeSHHyperGParams"
universeGeneIds<-	Class "MeSHHyperGParams"
universeGeneIds<--method	Class "MeSHHyperGParams"