FARMS - Factor Analysis for Robust Microarray Summarization

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Documentation for package ‘farms’ version 1.50.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

dummy	Example cdfenv
expFarms	Factor Analysis for Robust Microarray Summarization
generateExprVal.method.farms	Generate an expression value from the probes informations
getI_Eset	Method to generate an ExpressionSet of informative genes
getI_Eset-method	Method to generate an ExpressionSet of informative genes
getI_Eset-methods	Method to generate an ExpressionSet of informative genes
getI_ProbeSets	Method to generate a vector of informative probe set names
getI_ProbeSets-method	Method to generate a vector of informative probe set names
getI_ProbeSets-methods	Method to generate a vector of informative probe set names
getNI_Eset	Method to generate an ExpressionSet of non-informative genes
getNI_Eset-method	Method to generate an ExpressionSet of non-informative genes
getNI_Eset-methods	Method to generate an ExpressionSet of non-informative genes
getNI_ProbeSets	Method to generate a vector of non-informative probe set names
getNI_ProbeSets-method	Method to generate a vector of non-informative probe set names
getNI_ProbeSets-methods	Method to generate a vector of non-informative probe set names
INIcalls	Dimension reduction based on informative genes
INIcalls-method	Dimension reduction based on informative genes
INIcalls-methods	Dimension reduction based on informative genes
INI_Calls	Class INI_Calls
INI_Calls-class	Class INI_Calls
lFarms	lFarms expression measure
plot	Visualizes the distribution of informative and non-informatives genes
plot-method	Visualizes the distribution of informative and non-informatives genes
plot-methods	Visualizes the distribution of informative and non-informatives genes
qFarms	qFarms expression measure
summary	Summary of I/NI-calls
summary-method	Summary of I/NI-calls
summary-methods	Summary of I/NI-calls
testAffyBatch	AffyBatch instance testAffyBatch