addXYfromGAL |
Computing the coordinates of the spots on a slide |
addXYfromGAL-methods |
Computing the coordinates of the spots on a slide |
aqm.boxplot |
Functions for computing quality report modules. |
aqm.density |
Functions for computing quality report modules. |
aqm.heatmap |
Functions for computing quality report modules. |
aqm.maplot |
Functions for computing quality report modules. |
aqm.meansd |
Functions for computing quality report modules. |
aqm.nuse |
Functions for computing quality report modules. |
aqm.pca |
Functions for computing quality report modules. |
aqm.pmmm |
Functions for computing quality report modules. |
aqm.probesmap |
Functions for computing quality report modules. |
aqm.rle |
Functions for computing quality report modules. |
aqm.rnadeg |
Functions for computing quality report modules. |
aqm.spatial |
Functions for computing quality report modules. |
aqm.writereport |
Write a quality report |
aqmReportModule |
Class to contain all the information to render a quality report module. |
aqmReportModule-class |
Class to contain all the information to render a quality report module. |
arrayQualityMetrics |
Quality metrics for microarray experiments |
boxplotOutliers |
Helper functions for outlier detection and reporting in arrayQualityMetrics |
class:aqmReportModule |
Class to contain all the information to render a quality report module. |
class:outlierDetection |
Represents the results from applying an outlier detection criterion to the arrays. |
outlierDetection |
Represents the results from applying an outlier detection criterion to the arrays. |
outlierDetection-class |
Represents the results from applying an outlier detection criterion to the arrays. |
outliers |
Helper functions for outlier detection and reporting in arrayQualityMetrics |
prepaffy |
Compute useful summary statistics from a data object. |
prepdata |
Compute useful summary statistics from a data object. |