Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

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Documentation for package ‘MMUPHin’ version 1.12.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

adjust_batch	Zero-inflated empirical Bayes adjustment of batch effect in compositional feature abundance data
continuous_discover	Unsupervised meta-analytical discovery and validation of continuous structures in microbial abundance data
CRC_abd	Species level feature abundance data of five public CRC studies
CRC_meta	Sample metadata of five public CRC studies
discrete_discover	Unsupervised meta-analytical discovery and validation of discrete clustering structures in microbial abundance data
lm_meta	Covariate adjusted meta-analytical differential abundance testing
vaginal_abd	Species level feature abundance data of two public vaginal studies
vaginal_meta	Sample metadata of two public vaginal studies