Empirical RNA-seq Sample Size Analysis

Documentation for package ‘ERSSA’ version 1.16.0

combinations.partial	Example list of combinations generated by comb_gen function.
comb_gen	Calculate unique combinations of samples at varying replicate number
condition_table.full	Example table of sample names and conditions
condition_table.partial	Example table of sample names and conditions
count_filter	Filter RNA-seq expression table
count_table.filtered.partial	Example count table of GTEx RNA-seq experiment, fitered by count_filter function
count_table.full	Example count table of GTEx RNA-seq experiment
count_table.partial	Example count table of GTEx RNA-seq experiment
deg.partial	Example list of DE genes generated by edgeR
erssa	Empirical RNA-seq Sample Size Analysis
erssa_deseq2	Run DESeq2 for computed sample combinations
erssa_deseq2_parallel	Run DESeq2 for computed sample combinations with parallel computing
erssa_edger	Run edgeR for computed sample combinations
erssa_edger_parallel	Run edgeR for computed sample combinations with parallel computing
ggplot2_dotplot	Plot number of DE genes
ggplot2_intersectPlot	Plot number of DE genes that is common across combinations
ggplot2_marginPlot	Plot percent increase in detection of DE genes across replicate levels
ggplot2_TPR_FPRPlot	Plot TPR and FPR of each combination