interface to python sklearn via Rstudio reticulate

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Documentation for package ‘BiocSklearn’ version 1.20.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

getTransformed	container for sklearn objects and transforms
getTransformed-method	container for sklearn objects and transforms
h5mat	create a file connection to HDF5 matrix
H5matref	obtain an HDF5 dataset reference suitable for handling as numpy matrix
SkDecomp	constructor for SkDecomp
SkDecomp-class	container for sklearn objects and transforms
skIncrPartialPCA	use basilisk discipline to perform partial (n_components) incremental (chunk.size) PCA with scikit.decomposition
skIncrPCA	use sklearn IncrementalPCA procedure
skIncrPCA_h5	demo of HDF5 processing with incremental PCA/batch_size/fit_transform
skIncrPPCA	optionally fault tolerant incremental partial PCA for projection of samples from SummarizedExperiment
skIncrPPCA-method	optionally fault tolerant incremental partial PCA for projection of samples from SummarizedExperiment
skKMeans	interface to sklearn.cluster.KMeans using basilisk discipline
skPartialPCA_step	take a step in sklearn IncrementalPCA partial fit procedure
skPCA	use sklearn PCA procedure
skPWD	use sklearn pairwise_distances procedure