Interspecies gene mapping


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Documentation for package ‘orthogene’ version 1.4.2

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orthogene-package 'orthogene': Interspecies gene mapping
aggregate_mapped_genes Aggregate/expand a gene matrix by gene mappings
all_genes Get all genes
all_species All species
convert_orthologs Map genes from one species to another
create_background Create gene background
exp_mouse Gene expression data: mouse
exp_mouse_enst Transcript expression data: mouse
format_species Format species names
get_silhouettes Get silhouettes
gprofiler_namespace gconvert namespaces
gprofiler_orgs Reference organisms
infer_species Infer species from gene names
map_genes Map genes
map_orthologs Map orthologs
map_species Standardise species names
orthogene 'orthogene': Interspecies gene mapping
plot_orthotree Create a phylogenetic tree of shared orthologs
prepare_tree Prepare a phylogenetic tree
report_orthologs Report orthologs