Predict synthetic lethal partners of tumour mutations


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Documentation for package ‘mslp’ version 1.0.2

Help Pages

comp_slp Identify SLPs via compensation
cons_slp Identify consensus SLPs
corr_slp Identify SLPs via correlation
est_im Estimate the importance threshold for GENIE3
example_compSLP SLPs predicted by comp_slp
example_comp_mut Patients mutations to be use in the comp_slp
example_corrSLP SLPs predicted by corr_slp
example_corr_mut Patients mutations to be use in the corr_slp
example_expr Expression data to be used in comp_slp
example_z Expression data to be used in corr_slp
genie3 Run GENIE3
getlink Get sorted list of regulatory links in GENIE3 results
merge_slp Merge SLPs
pp_tcga Process tumour genomic data
scr_slp Identify SLPs in screen hits