iPath pipeline for detecting perturbed pathways at individual level


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Documentation for package ‘iPath’ version 1.4.2

Help Pages

density_fall density fall plot
GSDB_example example gene set database (GSDB)
GSEA GSEA calculation
iES_cal2 iES calculation Function
iES_surv iES calculation Function
iES_survPlot iES survival for a certain pathway
prad_cli simulated clinical data for PRAD cancer patients
prad_exprs expression matrix for PRAD cancer patients in TCGA
prad_inds normal (0) and tumor (1) classes associated with PRAD expression data
rem_data remove genes with 0 sd
setUp_BPPARAM set up for the parallel computing for biocParallel.
water_fall water fall plot