coexnet: An R package to build CO-EXpression NETworks from Microarray Data


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Documentation for package ‘coexnet’ version 1.20.0

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affy Greene-5P01NS017771-220003: Microarray expression experiment related with Parkinson disease.
CCP Finding Common Connection Pattern between different networks.
cofVar Calculating the coefficient of variation for expression matrix.
createNet Creating a co-expression network from expression matrix.
difExprs Differential expression analysis using two different methods.
exprMat Calculate the expression matrix from the raw expression data.
findThreshold Find the threshold value to create a co-expression network
geneSymbol Create a table relating probesets with genes
getAffy Charge and create an AffyBatch object
getInfo Download raw expression data from GEO DataSet
info Table with the relation between the probesets and the corresponding gene.
net1 Simulated network #1
net2 Simulated network #2
ppiNet Create a protein-protein interaction network
sharedComponents Finding shared components between diferent networks.