apply_adj | Main PTM adjustment function |
dia_skyline_model | Example of Sklyine DDA dataset modeled using MSstats 'groupComparison' function. |
dia_skyline_summarized | Example of Sklyine DDA dataset processed using MSstats summarization function. |
example_dia_skyline | Example of input Sklyine DDA dataset. |
example_skyline_annotation | Example annotation file |
groupComparisonPlots2 | Plotting funcitonality for QC plots |
launch_MSstatsShiny | Run MSstatsShiny Application |
lf_model | Main LF modeling function for MSstatsShiny application |
lf_summarization_loop | Main LF calculation summarization function for MSstatsShiny application |
MSstatsShiny | MSstatsShiny: An R-shiny based package for detecting differencially abundant proteins, integrated with the MSstats family of packages. |
QC_check | Quick QC value check |
radioTooltip | Custom function to create radio tool tips |
tmt_model | Main TMT modeling function for MSstatsShiny application |
tmt_pd_model | Example of TMT dataset modeled using MSstatsTMT 'groupComparisonTMT' function. |
tmt_pd_summarized | Example of TMT dataset processed using MSstatsTMT summarization function. |
tmt_summarization_loop | Main TMT summarization calculation function for MSstatsShiny application |
xy_str | Simple function to return coordinates |