MSstats GUI for Statistical Anaylsis of Proteomics Experiments


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Documentation for package ‘MSstatsShiny’ version 1.0.10

Help Pages

apply_adj Main PTM adjustment function
dia_skyline_model Example of Sklyine DDA dataset modeled using MSstats 'groupComparison' function.
dia_skyline_summarized Example of Sklyine DDA dataset processed using MSstats summarization function.
example_dia_skyline Example of input Sklyine DDA dataset.
example_skyline_annotation Example annotation file
groupComparisonPlots2 Plotting funcitonality for QC plots
launch_MSstatsShiny Run MSstatsShiny Application
lf_model Main LF modeling function for MSstatsShiny application
lf_summarization_loop Main LF calculation summarization function for MSstatsShiny application
MSstatsShiny MSstatsShiny: An R-shiny based package for detecting differencially abundant proteins, integrated with the MSstats family of packages.
QC_check Quick QC value check
radioTooltip Custom function to create radio tool tips
tmt_model Main TMT modeling function for MSstatsShiny application
tmt_pd_model Example of TMT dataset modeled using MSstatsTMT 'groupComparisonTMT' function.
tmt_pd_summarized Example of TMT dataset processed using MSstatsTMT summarization function.
tmt_summarization_loop Main TMT summarization calculation function for MSstatsShiny application
xy_str Simple function to return coordinates