.cleanRawPD | Clean raw Proteome Discoverer data |
as.data.frame.MSstatsValidated | Convert output of converters to data.frame |
as.data.table.MSstatsValidated | Convert output of converters to data.table |
getInputFile | Get one of files contained in an instance of 'MSstatsInputFiles' class. |
getInputFile-method | Get one of files contained in an instance of 'MSstatsInputFiles' class. |
MSstatsBalancedDesign | Creates balanced design by removing overlapping fractions and filling incomplete rows |
MSstatsClean | Clean files generated by a signal processing tools. |
MSstatsClean-method | Clean files generated by a signal processing tools. |
MSstatsConvert | MSstatsConvert: An R Package to Convert Data from Mass Spectrometry Signal Processing Tools to MSstats Format |
MSstatsImport | Import files from signal processing tools. |
MSstatsLogsSettings | Set how MSstats will log information from data processing |
MSstatsMakeAnnotation | Create annotation |
MSstatsPreprocess | Preprocess outputs from MS signal processing tools for analysis with MSstats |
MSstatsSaveSessionInfo | Save session information |